We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Changing or Removing Filters

I would like to know how to see what filtering is applied to the variants, their default values, and how I might be able to change them. I have read the filters mentioned in the paper but I would like to maybe remove/change some of the filters.

Right know you only have "REJECT" as the comment if a variant is filtered, is there another way to tell why a variant is filtered?

Thanks for you help!


  • kcibulkcibul Cambridge, MAMember, Broadie, Dev ✭✭✭

    The easiest way to get some insight in to which filter are being triggered and why is to run with the


    option. This will output many more columns of information including the values for all the filters as described in the publication. In addition, there will also be a column "failure_reasons" that will tell you exactly what filter(s) caused the mutation to be rejected.

Sign In or Register to comment.