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Changing or Removing Filters
I would like to know how to see what filtering is applied to the variants, their default values, and how I might be able to change them. I have read the filters mentioned in the paper but I would like to maybe remove/change some of the filters.
Right know you only have "REJECT" as the comment if a variant is filtered, is there another way to tell why a variant is filtered?
Thanks for you help!