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Can you explain me why the following SNV are rejected ?

philippephilippe Member
edited February 2013 in Ask the GATK team

chr19 53553414 C T SampleA SampleB 0 NOVEL COVERED 1 1 1 979 17 534 284.547911 0.361404 0.02 12.42847 182 103 6581 3164 0 0 CC 152.489416 507 0 16358 0 REJECT

chr12 336758 T A SampleA SampleB 0 NOVEL COVERED 1 1 1 586 2 0 325.66378 0.4 0.02 11.532111 171 114 5445 3546 0 0TT 106.969494 367 2 10357 31 REJECT

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