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Does GATK accept multiple hits ?

Hello,

I want to use this software but before that, I wanted to know if it accepts multiple hits.
I mean when a read can be mapped in different positions, i wanted to know if the software will return just one random position or will it return one of the best mapping position for this read.
And is it possible with an option to have all the positions of that read ?

advance thanks,
Siva

Best Answer

Answers

  • snandysnandy Member

    Oh okay i see, thank you for this information.
    I'm going to map with an other tool :)

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