We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Does GATK accept multiple hits ?


I want to use this software but before that, I wanted to know if it accepts multiple hits.
I mean when a read can be mapped in different positions, i wanted to know if the software will return just one random position or will it return one of the best mapping position for this read.
And is it possible with an option to have all the positions of that read ?

advance thanks,

Best Answer


  • snandysnandy Member

    Oh okay i see, thank you for this information.
    I'm going to map with an other tool :)

Sign In or Register to comment.