Issue with GenotypeGVCFs - GATK 18.104.22.168
I have got a problem running GenotypeGVCFs. The error is mentioned below.
A USER ERROR has occurred: Bad input: malformed RAW_MQ annotation: 2346838272,3678071
Apparently, it seems the issue has been raised on GitHub but has not been addressed yet. Here is the link:
I was wondering whether anyone could give me a quick solution for it. Thank you.