Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

GATK Python wrappers??

priesgopriesgo PanamáMember
edited January 2013 in Ask the GATK team

Hi all,

Wouldn't it be useful to have GATK wrapped into a Python API?
pygatk. As pysam is for samtools or pybedtools is for bedtools. Is anybody developing this?

Regards,
Pablo.

Post edited by Geraldine_VdAuwera on

Comments

Sign In or Register to comment.