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Resource Annotation by Variant rather than Site
I would like to have certain annotations applied only if the variants in the resource and the target have the same genomic change. Ex: In Cosmic the following variants are present.
12 25398284 . C G . PASS Genename=KRAS;MutationAA=p.G12A;MutationCDS=c.35G>C 12 25398284 . C A . PASS Genename=KRAS;MutationAA=p.G12V;MutationCDS=c.35G>T 12 25398284 . C T . PASS Genename=KRAS;MutationAA=p.G12D;MutationCDS=c.35G>A
However, in my VCF file I get the G12A annotation for all variants at this site even if the actual change is G12V or G12D.
Is this possible?