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Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Quality Control/ Diagnostic Tools

I was wondering what is the best walker to use when we want to know the following information:

of reads, % duplication, % on target, mean target coverage and uniformity of coverage on target from.

The documentation of the QC walkers is a little incomplete, and I am not sure which is the best one to use.


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