Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Base Recalibrator Issue
I got the following error with GenomeAnalysisTK-2.2-2-gf44cc4e's Base Recalibrator.
##### ERROR MESSAGE: Key 2006 is too large for dimension 2 (max is 2001)
I also ran the picard's validateSamFile to validate my BAM file and it says NO ERRORs.
What exactly does this error mean? what key is it talking about? And how can I fix it?