Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Is there a replacement for argument '--multiallelic' for Unified Genotyper?
Is there a new argument to replace '--multiallelic' . I am trying to determine all valid alternative alleles for a single position even if the call is the same as the reference. Both the sample(s) and the reference are haploid bacterial genomes.