Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
STAMPY and RealignerTargetCreator
before I only used BWA and as you described in the best pratice I performed the realign step.
Now I want to integrate in my pipeline Stampy associated with BWA.
Do you think, I should make the realign step ?
Post edited by Geraldine_VdAuwera on