Attention:
The frontline support team will be unavailable to answer questions on April 15th and 17th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!

STAMPY and RealignerTargetCreator

jpofmarsjpofmars Member
edited January 2013 in Ask the GATK team

Hello,

before I only used BWA and as you described in the best pratice I performed the realign step.
Now I want to integrate in my pipeline Stampy associated with BWA.

Do you think, I should make the realign step ?

Thanks !

Post edited by Geraldine_VdAuwera on

Best Answer

Answers

Sign In or Register to comment.