Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
VQSR data from nature paper available?
I would like to experiment with some of the different parameters for VQSR. Are the annotated VCF files which generated the scatter plots in the paper "A framework for variation discovery and genotyping using next-generation DNA sequencing data" available publicly for download somewhere?