Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
MuTect and SomaticIndelDetector
Hi, Dear Kristian Cibulskis:
Sorry. I just saw this comments above and re-posted my questions here about MuTect:
Just a few questions about MuTect, which I was confused or not so clear based on GATK documentation
Is the MuTect is the same as the so called SomaticIndelDetector in GATK 2.0 as described at the following URL; (I felt they are different, just want to confirm)
If they are different, how to access the MuTect from GATK using -T option or other methods, or we have to follow the following URL as mentioned above to download?
Thank you for your help!