MuTect and SomaticIndelDetector
Hi, Dear Kristian Cibulskis:
Sorry. I just saw this comments above and re-posted my questions here about MuTect:
Just a few questions about MuTect, which I was confused or not so clear based on GATK documentation
Is the MuTect is the same as the so called SomaticIndelDetector in GATK 2.0 as described at the following URL; (I felt they are different, just want to confirm)
If they are different, how to access the MuTect from GATK using -T option or other methods, or we have to follow the following URL as mentioned above to download?
Thank you for your help!