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some genotype calls are wrong, why?
Hello the team,
For some genotypes, it seems are wrong, I know it's model based, and base q, map q, etc are considered in the model.
I also read this link:
But my case are special,
the format is (ref allele count)/(alternative allele count) genotype call:
In one case, the two variants are adjacent to each other.
In some case, they are one base indels.