Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Where do I get missing walkers?
I've downloaded both the full and the Lite version of GATK 2.0. In both cases the available java files in the folder "resources" are the following:
CountLoci; DepthOfCoverage; Pileup; ValidatingPileup; CountReads; PrintReads
Do these correspond to the actually available walkers in my installation?
If so, is there a way to get the other GATK walkers? I have non-commercial purposes and was planning to test some pipelines, so actually any version would do.