The frontline support team will be unavailable to answer questions on April 15th and 17th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!
Where do I get missing walkers?
I've downloaded both the full and the Lite version of GATK 2.0. In both cases the available java files in the folder "resources" are the following:
CountLoci; DepthOfCoverage; Pileup; ValidatingPileup; CountReads; PrintReads
Do these correspond to the actually available walkers in my installation?
If so, is there a way to get the other GATK walkers? I have non-commercial purposes and was planning to test some pipelines, so actually any version would do.