Geraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin
edited September 2012 in GenomeSTRiP Documentation
The MergeGenotyperOutput utility merges the results of a parallel genotyping
run into genome-wide output files.
In addition to merging the main VCF files, this utility will also merge the
auxilliary output files (but leave them in the run directory).
2. Inputs / Arguments
-runDirectory <directory>: The run directory where the output files from
each partition are stored.
-O <vcf-file>: The location to write the merged output VCF file.
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