Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Geraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin
edited September 2012 in GenomeSTRiP Documentation
The MergeDiscoveryOutput utility merges the results of a parallel discovery
run into genome-wide output files.
In addition to merging the main VCF files, this utility will also merge the
auxilliary output files (but leave them in the run directory).
2. Inputs / Arguments
-runDirectory <directory>: The run directory where the output files from
each partition are stored.
-O <vcf-file>: The location to write the merged output VCF file.
Post edited by Geraldine_VdAuwera on