The current GATK version is 3.7-0
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Picard 2.10.4 has MAJOR CHANGES that impact throughput of pipelines. Default compression is now 1 instead of 5, and Picard now handles compressed data with the Intel Deflator/Inflator instead of JDK.
GATK version 4.beta.2 (i.e. the second beta release) is out. See the GATK4 BETA page for download and details.


Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie
edited September 2012 in GenomeSTRiP Documentation

1. Introduction

The ComputeInsertStatistics utility prints statistics about the data in a
binary histogram file.

The printed metrics include the median insert size and robust standard
deviation (RSD). The RSD is the width of the central 68% of the insert size

2. Inputs / Arguments

  • -I <histogram-file> : The input binary histogram file.

3. Outputs

  • -O <output-file> : Tab-delimited output file (default is stdout).
Post edited by Geraldine_VdAuwera on
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