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VariantAnnotator list option not working?
The VariantAnnotator list option doesn't seem to be working. I just downloaded GATK Like 2.1.3, and I'm trying the command:
java -jar GenomeAnalysisTKLite.jar -T VariantAnnotator --list
But I just get the same help and error message (--variant argument is missing) as I would without the --list (or -ls) flag. Is this a bug or am I doing something wrong?