Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
UmiAwareMarkDuplicatesWithMateCigar between Picard 2.9.0 and 2.18.9
My institution is moving the HPC servers, and as a side effect causes a small downgrade of Picard, from 2.18.9 to 2.9.0. I have followed the release notes and there seems to have no algorithm changes between these two versions aside from the metrics output. Can the GATK team please confirm that's the case? Thanks!