The Frontline Support team will be slow to respond December 17-18 due to an institute-wide retreat and offline December 22- January 1, while the institute is closed. Thank you for your patience during these next few weeks. Happy Holidays!
UmiAwareMarkDuplicatesWithMateCigar between Picard 2.9.0 and 2.18.9
My institution is moving the HPC servers, and as a side effect causes a small downgrade of Picard, from 2.18.9 to 2.9.0. I have followed the release notes and there seems to have no algorithm changes between these two versions aside from the metrics output. Can the GATK team please confirm that's the case? Thanks!