Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
SelectVariants processing 0 variants with -ids rsidlist.txt \-V Homo_sapiens_assembly38.dbsnp138.vcf
The title probably says it all, the above vcf is the second genome I have used to extract the desired rsids from using a text file with each rsid separated by a newline. In each case the resultant filtered vcf file contains 0 variants. I am unable to determine why.
Apologies if I have not asked the question in a convenient manner.