VariantsToTable : Badly formed genome location
I want to use VariantsToTable on a vcf files with Structurales Variations.
In my vcf, I have a translocation chr1:861936 => chr14:295688
But i have this error with this line :
Badly formed genome location: Parameters to GenomeLocParser are incorrect:The stop position 295688 is less than start 861936 in contig chr1
line in vcf :
chr1 861936 TRA006SUR N N[chr8:295687[ . PASS SVTYPE=BND;CHR2=chr8;END=295688
Do you have a solution?