Test-drive the GATK tools and Best Practices pipelines on Terra

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Family analysis

Hi Sheila,
Is this possible to identify variants that comes from mother or father allele in family analysis using GATK pipeline?

Affected child
ref: AA Alt: AT GT: 0/1

Unaffected Mother
ref: AA Alt: AA GT:0/0

Unaffected father
ref: AA Alt: AT GT:0/1

Best Answer


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