Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Variant Calling

Why is "Joint Genotyping" (i.e. gatk_GenotypeGVCFs.py) missing in RNAseq variant calling, but present in DNAseq variant calling? It this because of the difference between "HC in ERC mode" and "HC in RNAseq mode"? What is the difference between these two modes? Thanks.


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