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Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Examples of exome fastq and vcfs using GATK4 HaplotypeCaller + bwa mem 0.7.17?
I'm working on a GATK 4.0 fastq to vcf pipeline, and I'm wondering for validation purposes if anyone knows where I could find, or could share with me, exome fastq files and their corresponding vcfs after running HaplotypeCaller (GATK4) and bwa-mem (0.7.17)? Thanks so much.