Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Meaning of --min_base_quality_score
What is the --min_base_quality_score mean ?
Is it base on the mapping quality in the sam/bam file or the sequencing base quality?
I'm a little bit confused by the description of the tool document in UnifiedGenotyper or HaplotypeCaller.