Missing sample_file -sf option in GATK4 SelectVariants

In the port over to gatk SelectVariants the sample name -sn and sample expression -se options made it in, but the sample_file -sf option did not seem to make it. I tried:

gatk SelectVariants \
  -V in.vcf.gz \
  -O out.vcf.gz \
  -RF SampleReadFilter \
  -sample sample_list_file.txt

as a workaround, and it didn't have any errors, but the output file is more than three times the size of the input file, and still shows all the samples.


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