We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Non model organisms SNP database
When creating a custom training database of "known sites" we do stringent filtering to create a .vcf of variants to use. If we have one control sample and several phenotype samples- does the created database come from their respective sample or do we create the database from the control sample and use that database as the training database of "known sites" for all the samples? Are these custom training databases used in Mutect2?