The frontline support team will be unavailable to answer questions until May27th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!

What happend when I use gatk HaplotypeCaller, it become very slow.

When I use gatk HaplotypeCaller, I got this error:

WARN IntelPairHmm - Intel GKL Utils not loaded
WARN PairHMM - ***WARNING: Machine does not have the AVX instruction set support needed for the accelerated AVX PairHmm. Falling back to the MUCH slower LOGLESS_CACHING implementation!

I can run HaplotypeCaller normally before, since I got this , the progress became twice slower. I am sure my CPU support AVX instruction.



Sign In or Register to comment.