Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Question about the reference build used in GATK

Hi,

Can I use GRCh38.p12 (the latest patch) as a reference instead of re reference file inside the bundle?

dbSNP151 uses as a reference the GRCh38.p7. Is it a problem to use GRCh38.p12 or even the reference in the bundle?

Answers

Sign In or Register to comment.