We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Specifying memory requirments in GATK4 when GATK is installed using conda

How can I specify memory requirements for BaseRecalibrator? Where do I add -Xmx???m? Here is my command:
~/gatk- BaseRecalibrator -R Refgenome.fasta -I KMM2_bwamem_alignment_samblaster_samtoolsview_samtoolssort_09292018.bam --known-sites KMM2_combined_filtered_variants_filter1_10012018.vcf -O KMM2_bqsr1.table

Best Answer


Sign In or Register to comment.