Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

vcf heterozygous ratio

I am trying to compute the heterozygous/homozygote ratio from a vcf file. do you consider all sites, even those that have a low quality (<20) and low depth (<3)?


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