If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
the number of reads of diploidy, triploidy and tetraploidy
Hello, I'm suhye from southkorea
I usually used GATK4 tools for analysis my data! thanks
When i used GATK4-Mutect2 tool for somatic mutation calling,
I have got some questions of this tool.
In Genotype column, I could find 0/1/2 , 0/1/2/3 or 0/1/2/3/4 instead of 0/1. this call means diplody, triploidy. . . right?
So how can I get the number of alternated read?
In this call, Can i get the number of alternated read by just adding (3+14)?
as i know, 35 means the number of reference allele reads.
Thanks, GATK team!