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I was using the brand new DetermineGermlineContigPloidy in However I met a error. In COHORT mode, DetermineGermlineContigPloidy need a TSV file specifying prior probabilities for each integer ploidy state and for each contig.The following shows an example of such a table:

In the example in COHORT mode, a_valid_ploidy_priors_table.tsv is needed.

I could not find a tool in gatk to produce a_valid_ploidy_priors_table.tsv. So how could I produce the file to perform DetermineGermlineContigPloidy?


Best Answer


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