If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

GATK 4 VariantRecalibrator example using unavailable option: --recal-file

cr517cr517 CambridgeMember


On this page:

VariantRecalibrator is using --recal-file it the example command. However, this option is not available to the tool. Do you mean --output, which is described in the help of the tool as The output recal file used by ApplyRecalibration Required.?


Sign In or Register to comment.