Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Required R packages to run AnalyzeCovariates

I was trying to run AnalyzeCovariates, but I keep getting error messages saying;

Stderr: Error in library("ggplot2") : there is no package called ‘ggplot2’

Since I don't have sudo access to the server I'm working on, I had to repeatedly ask the administrator to download the R packages for me. Can you please add a full list of R-packages that are required to run AnalyzeCovariates to the documentation?

Cheers,
James

Best Answer

Answers

Sign In or Register to comment.