Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
What are the standard resources for non-human genomes?
We're trying to put together some recommendations for folks who want to use GATK tools on non-human genomes. But we really don't have much experience with non-human genomes, so we're hoping that those of you in the GATK community who do will chime in and help your fellow scientists find the answers for a few common problems.
The most common problem seems to be finding sets of known sites for organisms like Drosophila, dogs, and various plants. If you know of such resources, please share your knowledge by commenting in this thread. You could earn upvotes and warm fuzzy feelings!