Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
PoN for CNV_Somatic_Pair_Workflow
I am looking to use the open access PoN (gs://firecloud-tcga-open-access/tutorial/reference/open_access_pon_from_1000g.pon) but when I use this file as the input into the method CNV_Somatic_Pair_Workflow I get the following error:
A USER ERROR has occurred: Bad input: The panel of normals is out of date and incompatible. Please use a panel of normals that was created by CreateReadCountPanelOfNormals and is version 7.0.
Is there some preprocessing of the file that I should be doing?