Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
VariantRecalibrator (VQSR) without any training sets? (Simulated data)
How can I run VQSR in simulated variants data? In this dataset variants are randomly distributed along the genome so I can not use real truth vcf files. I have tried using the golden.vcf that the simulator produces but it says that it also needs annotation files, so what can I do?