If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Appropriate WGS Mutect normal_panel

ekofmanekofman Member, Broadie


I'm running mutect1 with WGS and am trying to figure out what the appropriate attribute to use for the normal_panel is. I'm guessing it might be this 1000 genomes file ALL.wgs.phase3_shapeit2_mvncall_integrated_v5b.20130502.sites.vcf.gz from, but am not sure. Any advice would be appreciated! Most of the information out there seems geared towards exomes.



Best Answer


Sign In or Register to comment.