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ApplyVQSR page example error

Dear team,
Thanks for the wonderful development of this tool.
When I tried out ApplyVQSR with GATK4, I was following the examples from https://software.broadinstitute.org/gatk/documentation/tooldocs/current/org_broadinstitute_hellbender_tools_walkers_vqsr_ApplyVQSR.php,
and found the option --ts_filter_level in the example not recognised by GATK. Further reading on the page suggested the option should really be -ts-filter-level, and --ts_filter_level was a carry over from GATK 3.x. Can you please correct it?

Best Answer


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