Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Can not download reference files for running Pathseq pipeline.
I am trying to download the pre-built reference files for running Pathseq pipeline from GATK Resource Bundle FTP server in /bundle/beta/PathSeq/. But it fails with some permission denies for data transferring. Could you double-check the visiting privilege of files under the path /bundle/beta/PathSeq/.
Thank you in advance