Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Does ReadBackedPhasing use paired end information

ealleneallen Member
edited July 2012 in Ask the GATK team

Hi,

I've found some paired end reads in which read1 captures one het site, and read2 captures another het site, with no hets in between, but the two hets are not in phase according to ReadBackedPhasing. Does RBP take advantage of paired reads ?

Thanks

Answers

Sign In or Register to comment.