Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Could Intel GKL used in GATK4 pipeline HaplotypecallerSpark？
We can run HaplotypecallerSpark to get a normal output by using GATK4, but we find although the log shows that "libgkl_pairhmm_omp.so" is loaded, but when we debug the code, we find that the GKL is not used.
we analyse the code and find the following function is not return , could you tell us why this function not return "regionAndIntervals"?