Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
The version of GATK i have installed is unable to find command "HaplotypeCaller", i have the following versions of GATK installed.
version 2.0-0-gb142977 (built from git)
version 2.0-0-g4c0ffd4 (GenomeAnalysisTKLite.jar)
Errors out saying cannot find walker with name HaplotypeCaller.