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Ion Torrent Oncomine Focus Assay Analysis

JoanGibertJoanGibert Member
edited May 2018 in Ask the GATK team

Hi!

I am aware that there is no "Best practices" pipeline for Ion Torrent data but I was wondering if there is any way to analyze panel data from the Ion Torrent Oncomine Focus Assay (52 genes and 53 samples). I guess I should use hard filtering but I am not sure how I should process these samples using GATK4.

Any advice?
Thanks!

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