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impact of kmer size on mutect2
Hi, I have a bam(PE50) which has an expected deletion(15bp), but mutect2 did not call this deletion at first, then I tried different kmer sizes, like 10,11,12...30. It's interesting that, mutect2 called this deletion when kmer size is at 17,27,28, but did not call this deletion at other kmer sizes. I wonder why it's like this.