If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
FilterMutectCalls - Key P_CONTAM found in VariantContext field Error
I am using GATK version 22.214.171.124. I get following error with
Key P_CONTAM found in VariantContext field INFO at chr1:289 but this key isn't defined in the VCFHeader. We require all VCFs to have complete VCF headers by default
Can you please help to resolve this?