Attention: Want an end-to-end pipelining solution for GATK Best Practices?
Is it possible to merge the multiple samples within a vcf file?
Greetings from Australia,
Could someone please help me with this?
I got a single vcf file containing 14 samples at the end of the best practices pipeline.
For a bulk segregation analysis, I would like to have these samples merged to form 2 bulks.
A QTLseqr (R) function will take a single table as input (VariantsToTable) but it only allows 2 sample names (BulkA and BulkB) to be specified.