NoSuchFileException during running JointGenotyping locally
Dear GATK developers,
I have a consistent problem when running the joint-discovery part of your gatk4-germline-snps-indels workflow.
Independent of the file(path) I get a NoSuchFileException which seems to be caused by running it locally and not on the cloud.
Please see my Github issue for details: https://github.com/gatk-workflows/gatk4-germline-snps-indels/issues/13
Please let me know if you need any further information in order to reproduce this.