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How do you know when SVPreprocess has successfully finshed?
I apologize in advance if this is a stupid question.
I'm coming from the world of gotcloud where when a step in the pipeline finishes a file called
all.done gets created for that step. So in the event a pipeline crashe, I can re-execute the program and it will pickup where it left off.
I've been running SVPreprocess for over a week now. It's crashed a few times, usually due to memory limits but I've overcome those. At no point did I clear out the
tmp folders or files.
I can't tell if it ever finished completely and I can move on with the next step in the CNV pipeline or if I'm starting from scratch each time.
Is there a file or a specific message I should look for?